Plant-pathogenic oomycetes, Escherichia coli strains, and Salmonella spp. Frequently found in surface water used for irrigation of fruit and vegetable crops in New York State.
Identifieur interne : 001013 ( Main/Exploration ); précédent : 001012; suivant : 001014Plant-pathogenic oomycetes, Escherichia coli strains, and Salmonella spp. Frequently found in surface water used for irrigation of fruit and vegetable crops in New York State.
Auteurs : Lisa A. Jones [États-Unis] ; Randy W. Worobo [États-Unis] ; Christine D. Smart [États-Unis]Source :
- Applied and environmental microbiology [ 1098-5336 ] ; 2014.
Descripteurs français
- KwdFr :
- Eau douce (microbiologie), Escherichia coli (classification), Escherichia coli (croissance et développement), Escherichia coli (génétique), Escherichia coli (isolement et purification), Fruit (croissance et développement), Fruit (microbiologie), Irrigation agricole (MeSH), Légumes (croissance et développement), Légumes (microbiologie), Oomycetes (classification), Oomycetes (croissance et développement), Oomycetes (génétique), Oomycetes (isolement et purification), Produits agricoles (croissance et développement), Produits agricoles (microbiologie), Salmonella (classification), Salmonella (croissance et développement), Salmonella (génétique), Salmonella (isolement et purification), Sécurité des aliments (MeSH), État de New York (MeSH).
- MESH :
- croissance et développement : Escherichia coli, Fruit, Légumes, Oomycetes, Produits agricoles, Salmonella.
- génétique : Escherichia coli, Oomycetes, Salmonella.
- isolement et purification : Escherichia coli, Oomycetes, Salmonella.
- microbiologie : Eau douce, Fruit, Légumes, Produits agricoles.
- Escherichia coli, Irrigation agricole, Oomycetes, Salmonella, Sécurité des aliments, État de New York.
English descriptors
- KwdEn :
- Agricultural Irrigation (MeSH), Crops, Agricultural (growth & development), Crops, Agricultural (microbiology), Escherichia coli (classification), Escherichia coli (genetics), Escherichia coli (growth & development), Escherichia coli (isolation & purification), Food Safety (MeSH), Fresh Water (microbiology), Fruit (growth & development), Fruit (microbiology), New York (MeSH), Oomycetes (classification), Oomycetes (genetics), Oomycetes (growth & development), Oomycetes (isolation & purification), Salmonella (classification), Salmonella (genetics), Salmonella (growth & development), Salmonella (isolation & purification), Vegetables (growth & development), Vegetables (microbiology).
- MESH :
- geographic : New York.
- classification : Escherichia coli, Oomycetes, Salmonella.
- genetics : Escherichia coli, Oomycetes, Salmonella.
- growth & development : Crops, Agricultural, Escherichia coli, Fruit, Oomycetes, Salmonella, Vegetables.
- isolation & purification : Escherichia coli, Oomycetes, Salmonella.
- microbiology : Crops, Agricultural, Fresh Water, Fruit, Vegetables.
- Agricultural Irrigation, Food Safety.
Abstract
In the United States, surface water is commonly used to irrigate a variety of produce crops and can harbor pathogens responsible for food-borne illnesses and plant diseases. Understanding when pathogens infest water sources is valuable information for produce growers to improve the food safety and production of these crops. In this study, prevalence data along with regression tree analyses were used to correlate water quality parameters (pH, temperature, turbidity), irrigation site properties (source, the presence of livestock or fowl nearby), and precipitation data to the presence and concentrations of Escherichia coli, Salmonella spp., and hymexazol-insensitive (HIS) oomycetes (Phytophthora and Pythium spp.) in New York State surface waters. A total of 123 samples from 18 sites across New York State were tested for E. coli and Salmonella spp., of which 33% and 43% were positive, respectively. Additionally, 210 samples from 38 sites were tested for HIS oomycetes, and 88% were found to be positive, with 10 species of Phytophthora and 11 species of Pythium being identified from the samples. Regression analysis found no strong correlations between water quality parameters, site factors, or precipitation to the presence or concentration of E. coli in irrigation sources. For Salmonella, precipitation (≤ 0.64 cm) 3 days before sampling was correlated to both presence and the highest counts. Analyses for oomycetes found creeks to have higher average counts than ponds, and higher turbidity levels were associated with higher oomycete counts. Overall, information gathered from this study can be used to better understand the food safety and plant pathogen risks of using surface water for irrigation.
DOI: 10.1128/AEM.01012-14
PubMed: 24878603
PubMed Central: PMC4135776
Affiliations:
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surface water is commonly used to irrigate a variety of produce crops and can harbor pathogens responsible for food-borne illnesses and plant diseases. Understanding when pathogens infest water sources is valuable information for produce growers to improve the food safety and production of these crops. In this study, prevalence data along with regression tree analyses were used to correlate water quality parameters (pH, temperature, turbidity), irrigation site properties (source, the presence of livestock or fowl nearby), and precipitation data to the presence and concentrations of Escherichia coli, Salmonella spp., and hymexazol-insensitive (HIS) oomycetes (Phytophthora and Pythium spp.) in New York State surface waters. A total of 123 samples from 18 sites across New York State were tested for E. coli and Salmonella spp., of which 33% and 43% were positive, respectively. Additionally, 210 samples from 38 sites were tested for HIS oomycetes, and 88% were found to be positive, with 10 species of Phytophthora and 11 species of Pythium being identified from the samples. Regression analysis found no strong correlations between water quality parameters, site factors, or precipitation to the presence or concentration of E. coli in irrigation sources. For Salmonella, precipitation (≤ 0.64 cm) 3 days before sampling was correlated to both presence and the highest counts. Analyses for oomycetes found creeks to have higher average counts than ponds, and higher turbidity levels were associated with higher oomycete counts. Overall, information gathered from this study can be used to better understand the food safety and plant pathogen risks of using surface water for irrigation.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24878603</PMID><DateCompleted><Year>2015</Year><Month>08</Month><Day>06</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1098-5336</ISSN><JournalIssue CitedMedium="Internet"><Volume>80</Volume><Issue>16</Issue><PubDate><Year>2014</Year><Month>Aug</Month></PubDate></JournalIssue><Title>Applied and environmental microbiology</Title><ISOAbbreviation>Appl Environ Microbiol</ISOAbbreviation></Journal><ArticleTitle>Plant-pathogenic oomycetes, Escherichia coli strains, and Salmonella spp. Frequently found in surface water used for irrigation of fruit and vegetable crops in New York State.</ArticleTitle><Pagination><MedlinePgn>4814-20</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1128/AEM.01012-14</ELocationID><Abstract><AbstractText>In the United States, surface water is commonly used to irrigate a variety of produce crops and can harbor pathogens responsible for food-borne illnesses and plant diseases. Understanding when pathogens infest water sources is valuable information for produce growers to improve the food safety and production of these crops. In this study, prevalence data along with regression tree analyses were used to correlate water quality parameters (pH, temperature, turbidity), irrigation site properties (source, the presence of livestock or fowl nearby), and precipitation data to the presence and concentrations of Escherichia coli, Salmonella spp., and hymexazol-insensitive (HIS) oomycetes (Phytophthora and Pythium spp.) in New York State surface waters. A total of 123 samples from 18 sites across New York State were tested for E. coli and Salmonella spp., of which 33% and 43% were positive, respectively. Additionally, 210 samples from 38 sites were tested for HIS oomycetes, and 88% were found to be positive, with 10 species of Phytophthora and 11 species of Pythium being identified from the samples. Regression analysis found no strong correlations between water quality parameters, site factors, or precipitation to the presence or concentration of E. coli in irrigation sources. For Salmonella, precipitation (≤ 0.64 cm) 3 days before sampling was correlated to both presence and the highest counts. Analyses for oomycetes found creeks to have higher average counts than ponds, and higher turbidity levels were associated with higher oomycete counts. Overall, information gathered from this study can be used to better understand the food safety and plant pathogen risks of using surface water for irrigation.</AbstractText><CopyrightInformation>Copyright © 2014, American Society for Microbiology. All Rights Reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Jones</LastName><ForeName>Lisa A</ForeName><Initials>LA</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology and Plant-Microbe Biology, Cornell University, Geneva, New York, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Worobo</LastName><ForeName>Randy W</ForeName><Initials>RW</Initials><AffiliationInfo><Affiliation>Department of Food Science, Cornell University, Geneva, New York, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Smart</LastName><ForeName>Christine D</ForeName><Initials>CD</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology and Plant-Microbe Biology, Cornell University, Geneva, New York, USA cds14@cornell.edu.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2014</Year><Month>05</Month><Day>30</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Appl Environ Microbiol</MedlineTA><NlmUniqueID>7605801</NlmUniqueID><ISSNLinking>0099-2240</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D057914" MajorTopicYN="N">Agricultural Irrigation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018556" MajorTopicYN="N">Crops, Agricultural</DescriptorName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004926" MajorTopicYN="N">Escherichia coli</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D059022" MajorTopicYN="N">Food Safety</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005618" MajorTopicYN="N">Fresh Water</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005638" MajorTopicYN="N">Fruit</DescriptorName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009518" MajorTopicYN="N" Type="Geographic">New York</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009868" MajorTopicYN="N">Oomycetes</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012475" MajorTopicYN="N">Salmonella</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014675" MajorTopicYN="N">Vegetables</DescriptorName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2014</Year><Month>6</Month><Day>1</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2014</Year><Month>6</Month><Day>1</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2015</Year><Month>8</Month><Day>8</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">24878603</ArticleId><ArticleId IdType="pii">AEM.01012-14</ArticleId><ArticleId IdType="doi">10.1128/AEM.01012-14</ArticleId><ArticleId IdType="pmc">PMC4135776</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Mol Cell Probes. 1992 Aug;6(4):271-9</Citation><ArticleIdList><ArticleId IdType="pubmed">1528198</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 1993 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IdType="pubmed">14888646</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country><region><li>État de New York</li></region><settlement><li>Ithaca (New York)</li></settlement><orgName><li>Université Cornell</li></orgName></list><tree><country name="États-Unis"><region name="État de New York"><name sortKey="Jones, Lisa A" sort="Jones, Lisa A" uniqKey="Jones L" first="Lisa A" last="Jones">Lisa A. Jones</name></region><name sortKey="Smart, Christine D" sort="Smart, Christine D" uniqKey="Smart C" first="Christine D" last="Smart">Christine D. Smart</name><name sortKey="Worobo, Randy W" sort="Worobo, Randy W" uniqKey="Worobo R" first="Randy W" last="Worobo">Randy W. Worobo</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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